| 3 | 0 | 11 |
| 下载次数 | 被引频次 | 阅读次数 |
为探究内蒙古地区绵羊携带病毒情况,采集内蒙古某杜泊羊规模化养殖场的30只健康成年羊与10只腹泻羔羊的鼻咽拭子和肛拭子,通过宏转录组法和多重替代扩增法进行全谱病毒组学分析。结果表明:共注释到12个哺乳动物病毒科,对星状病毒、肠道病毒、口疮病毒与轮状病毒进行遗传进化分析,发现星状病毒与已知病毒遗传差异较大,为新病毒种;肠道病毒、口疮病毒和轮状病毒与参考毒株差异较小;PCR检测结果表明,该地区绵羊携带病毒具有多样性,且存在混合感染情况,初步获得了该养殖场病毒本底数据。研究结果丰富了该地区杜泊羊携带病毒的多样性数据,为病毒性疾病的预防提供参考。
Abstract:To investigate the virus carrying situation of sheep in Inner Mongolia region, nasopharyngeal swab and anal swab samples of 30 adult sheep and 10 diarrheic lambs from a large-scale Dupo sheep farm in Inner Mongolia were analyzed for full-spectrum virological analysis using a combination of meta-transcriptomic and multiple displacement amplification methods, which resulted in the identification of a total of 12 mammalian virus families. Genetic evolutionary analyses of astroviruses, enteroviruses, stomatitis viruses and rotaviruses revealed that astroviruses were genetically different from existing known viruses and were new viral species, while enteroviruses, stomatitis viruses and rotaviruses showed less differences with the reference strains. The PCR detection revealed the prevalence of the viruses carried by sheep in the farm and exhibited mixed infections, which obtained the background data of the viral diseases present in this farm. The research results enriched the data of the diversity of viruses carried by Dupo sheep in the region, laying a foundation, which helps understand the diversity of viruses carried by Dupo sheep and prevent viral infectious diseases.
[1]赵印. 2021年中国羊业生产形势及2022年趋势展望[J].畜牧产业,2022(3):28-31.
[2]Liu F, Li J, Li L, et al. Peste des petits ruminants in China since its first outbreak in 2007:A 10-year review[J]. Transboundary and Emerging Diseases, 2018, 65(3):638-648.
[3]Li W L, Mao L, Cheng S P, et al. A novel parainfluenza virus type 3(PIV3)identified from goat herds with respiratory diseases in Eastern China[J]. Veterinary Microbiology, 2014,174(1/2):100-106.
[4]刘在新.全球口蹄疫防控技术及病原特性研究概观[J].中国农业科学,2015, 48(17):3547-3564.
[5]李玉铎,赵建军,邵西群.病毒宏基因组学及其在动物病毒鉴定中的应用[J].中国兽医学报,2023, 43(7):1574-1581.
[6]Chen J J, Sun Y, Yan X M, et al. Elimination of foreign sequences in eukaryotic viral reference genomes improves the accuracy of virome analysis[J]. mSystems, 2022, 7(6):1-14.
[7]Bosch A, PintóR M, Guix S. Human astroviruses[J]. Clinical Microbiology Reviews, 2014, 27(4):1048-1074.
[8]Reuter G, Pankovics P, BorosÁ. Nonsuppurative(aseptic)meningoencephalomyelitis associated with neurovirulent astrovirus infections in humans and animals[J]. Clinical Microbiology Reviews, 2018, 31(4):e00040.
[9]Boujon C L, Koch M C, Kauer R V, et al. Novel encephalomyelitis-associated astrovirus in a muskox(Ovibos moschatus):A surprise from the archives[J]. Acta Veterinaria Scandinavica,2019, 61(1):31.
[10]Chang X R, Lin Q, Hu J Y, et al. Discovery of a virus of the species Enterovirus F in goats[J]. Archives of Virology, 2019,164(10):2551-2558.
[11]Wang M Y, He J, Lu H B, et al. A novel enterovirus species identified from severe diarrheal goats[J]. PLoS One, 2017,12(4):e0174600.
[12]Zell R, Delwart E, Gorbalenya A E, et al. ICTV Virus Taxonomy Profile:Picornaviridae[J]. The Journal of general virology, 2017, 98(10):2421-2422.
[13]Hollister J R, Vagnozzi A, Knowles N J, et al. Molecular and phylogenetic analyses of bovine rhinovirus type 2 shows it is closely related to foot-and-mouth disease virus[J]. Virology,2008, 373(2):411-425.
[14]Mitra N, Cernicchiaro N, Torres S, et al. Metagenomic characterization of the virome associated with bovine respiratory disease in feedlot cattle identified novel viruses and suggests an etiologic role for influenza D virus[J]. The Journal of General Virology, 2016, 97(8):1771-1784.
[15]Bhattarai S, Lin C M, Temeeyasen G, et al. Bovine rhinitis B virus is highly prevalent in acute bovine respiratory disease and causes upper respiratory tract infection in calves[J]. The Journal of General Virology, 2022, 103(2):001714.
[16]何莲花,冯瑄,陈燕,等. 1株轮状病毒疫苗衍生株的分离和鉴定[J].中国疫苗和免疫,2023(5):548-553.
[17]Papp H, LászlóB, Jakab F, et al. Review of group A rotavirus strains reported in swine and cattle[J]. Veterinary Microbiology, 2013, 165(3/4):190-199.
[18]Xu J P. Microbial ecology in the age of genomics and metagenomics:Concepts, tools, and recent advances[J]. Molecular Ecology, 2006, 15(7):1713-1731.
[19]Shi M, Zhang Y Z, Holmes E C. Meta-transcriptomics and the evolutionary biology of RNA viruses[J]. Virus Research,2018, 243:83-90.
[20]Parras-MoltóM, Rodríguez-Galet A, Suárez-Rodríguez P,et al. Evaluation of bias induced by viral enrichment and random amplification protocols in metagenomic surveys of saliva DNA viruses[J]. Microbiome, 2018, 6(1):119.
[21]张文,代紫苑,鲍思雯,等.病毒宏基因组学在新发病毒快速确认中的优势[J].江苏大学学报(医学版),2021, 31(1):6-10, 16.
基本信息:
DOI:10.13326/j.jea.2025.1886
中图分类号:S858.26
引用信息:
[1]王慧羽,特木尔巴根,孙悦,等.内蒙古杜泊羊鼻咽拭子和肛拭子样本的全病毒组分析[J].经济动物学报,2025,29(06):455-462.DOI:10.13326/j.jea.2025.1886.
基金信息:
国家自然科学基金项目(32130104)